Database names and Abbreviations
These are the names and abbreviations that are used to refer to specific
datasets or sources incorporated into Biozon.
that have been integrated into Biozon.
| Database Name |
Abbreviation |
| BIND | bind |
| GO | go |
| Genbank | gb |
| Genpept | gb |
| Interpro | ipr |
| KEGG | kegg |
| PDB | pdb |
| PIR | pir |
| Refseq | ref |
| SWISS-PROT | sp |
| TrEMBL | emb |
| Unigene | ug |
Searchable Objects
These are object data types in Biozon that represent biological objects or
concepts and are searchable via the Biozon complex search interface.
Other objects exist in the biozon type hierarchy, but these are the core
base types that occupy the leaves of the document hierarchy.
| Type Name |
Internal typeID |
Description |
| Domain | 53 | Domain part, Domain family, site, etc |
| Enzyme Family | 19 | Enzyme family based upon EC classification |
| Interaction | 37 | Known interactions between objects |
| Nucleic acid sequence | 5 | Nucleic acid sequence |
| Pathway | 20 | Metabolic Pathway |
| Protein | 4 | Sequence of Amino Acids |
| Structure | 26 | Protein structures as PDB coordinates |
| UniGene cluster | 48 | NCBI-defined Unigene cluster |
|
